voyagerpy.plotting.plot_barcode_data#

voyagerpy.plotting.plot_barcode_data(adata: AnnData, y: str | Sequence[str], x: str | None = None, obsm: str | None = None, ncol: int | None = None, cmap: None | str | ListedColormap | LinearSegmentedColormap = None, color_by: str | None = None, sharex: None | Literal['none', 'all', 'row', 'col'] | bool = None, sharey: None | str | bool = None, x_label: None | str | Sequence[str] = None, y_label: None | str | Sequence[str] = None, rc_context: Dict[str, Any] | None = None, ax: Axes | None = None, subplot_kwargs: Dict | None = None, **kwargs) → ndarray#

Plot barcode data from adata.obs or adata.obsm.

If multiple features are provided, the data will be plotted in a grid.

Parameters:

  • adata (AnnData) – The AnnData object to plot.

  • y (Union[str, Sequence[str]]) – The name of the column(s) to plot on the y-axis.

  • x (Optional[str], optional) – If not None, the name of the column(s) to plot on the x-axis, by default None,

  • obsm (Optional[str], optional) – If not None, use the columns from this obsm dataframe instead of obs , by default None.

  • ncol (Optional[int], optional) – The number of columns in the figure. If None, will use the number of x features, by default None.

  • cmap (Union[None, str, colors.ListedColormap, colors.LinearSegmentedColormap], optional) – The colormap to use, by default None.

  • color_by (Optional[str], optional) – The column name to use for coloring, by default None.

  • sharex (Union[None, Literal["none", "all", "row", "col"], bool], optional) – The sharex parameter to pass to matplotlib.pyplot.subplots, by default None.

  • sharey (Union[None, str, bool], optional) – The sharex parameter to pass to matplotlib.pyplot.subplots, by default None.

  • x_label (Union[None, str, Sequence[str]], optional) – The label to use for each x feature in the figure, by default None.

  • y_label (Union[None, str, Sequence[str]], optional) – The label to use for each y feature in the feature, by default None.

  • rc_context (Optional[Dict[str, Any]], optional) – matplotlib rc_context to override styling, by default None.

  • ax (Optional[Axes], optional) – The axes to draw on. If None, axes matching the number of features will be created, by default None.

  • subplot_kwargs (Optional[Dict], optional) – Parameters to pass to matplotlib.pyplot.subplots, by default None.

  • **kwargs – Additional arguments to pass to plot_single_barcode_data().

Returns:

An array of axes objects.

Return type:

np.ndarray[plt.Axes]