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VoyagerPy 0.1 documentation

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  • Installation
  • API
  • Technologies
  • Voyager - R

Site Navigation

  • Installation
  • API
  • Technologies
  • Voyager - R

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  • Plotting functions
    • voyagerpy.plotting.draw_graph
    • voyagerpy.plotting.grouped_violinplot
    • voyagerpy.plotting.imshow
    • voyagerpy.plotting.plot_bin2d
    • voyagerpy.plotting.plot_fitline
    • voyagerpy.plotting.scatter
    • voyagerpy.plotting.simple_violinplot
    • voyagerpy.plotting.elbow_plot
    • voyagerpy.plotting.moran_plot
    • voyagerpy.plotting.plot_barcode_data
    • voyagerpy.plotting.plot_barcode_histogram
    • voyagerpy.plotting.plot_barcodes_bin2d
    • voyagerpy.plotting.plot_correlogram
    • voyagerpy.plotting.plot_dim_loadings
    • voyagerpy.plotting.plot_expression
    • voyagerpy.plotting.plot_features_bin2d
    • voyagerpy.plotting.plot_features_histogram
    • voyagerpy.plotting.plot_local_result
    • voyagerpy.plotting.plot_moran_mc
    • voyagerpy.plotting.plot_pca
    • voyagerpy.plotting.plot_spatial_feature
    • voyagerpy.plotting.spatial_reduced_dim
    • voyagerpy.plotting.plot.configure_subplots
    • voyagerpy.plotting.plot.configure_violins
    • voyagerpy.plotting.plot.contour_plot
    • voyagerpy.plotting.plot.plot_single_barcode_data
    • voyagerpy.plotting.plot.subplots_single_colorbar
  • Spatial functions
    • voyagerpy.spatial.detect_tissue_threshold
    • voyagerpy.spatial.get_approx_tissue_boundary
    • voyagerpy.spatial.get_tissue_boundary
    • voyagerpy.spatial.get_tissue_contour_score
    • voyagerpy.spatial.get_geom
    • voyagerpy.spatial.get_spot_coords
    • voyagerpy.spatial.get_visium_spots
    • voyagerpy.spatial.set_geometry
    • voyagerpy.spatial.to_points
    • voyagerpy.spatial.to_spatial_weights
    • voyagerpy.spatial.apply_transforms
    • voyagerpy.spatial.cancel_transforms
    • voyagerpy.spatial.mirror_img
    • voyagerpy.spatial.rollback_transforms
    • voyagerpy.spatial.rotate_img90
    • voyagerpy.spatial.compute_spatial_lag
    • voyagerpy.spatial.local_moran
    • voyagerpy.spatial.losh
    • voyagerpy.spatial.moran
    • voyagerpy.spatial.compute_correlogram
    • voyagerpy.spatial.compute_higher_order_neighbors
    • voyagerpy.spatial.get_default_graph
    • voyagerpy.spatial.set_default_graph
  • Utils
    • Highly variable genes
      • voyagerpy.utils.model_gene_var
      • voyagerpy.utils.get_top_hvgs
    • Marker genes
      • voyagerpy.utils.find_markers
      • voyagerpy.utils.get_marker_genes
      • voyagerpy.utils.get_p_clusters
      • voyagerpy.utils.get_stat_clusters
    • Utility functions
      • voyagerpy.utils.add_per_cell_qcmetrics
      • voyagerpy.utils.add_per_gene_qcmetrics
      • voyagerpy.utils.get_scale
      • voyagerpy.utils.is_highres
      • voyagerpy.utils.is_lowres
      • voyagerpy.utils.kurtosis
      • voyagerpy.utils.log_norm_counts
      • voyagerpy.utils.scale
  • API
  • Plotting functions
  • voyagerpy.plotting.plot_features_histogram

voyagerpy.plotting.plot_features_histogram#

voyagerpy.plotting.plot_features_histogram(adata: AnnData, features: str | Sequence[str], fill_by: str | None = None, figsize: Tuple[float, float] | None = None, ncol: int = 1, cmap: str | None = None, bins: int = 100, log: bool = True, stacked: bool = False, histtype: str = 'step', markers: None | str | Sequence[str] = None, show_symbol: bool = True, **hist_kwargs) → ndarray[Any, dtype[Axes]]#

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