Utility functions#

add_per_cell_qcmetrics(adata, subsets[, force])

Add per-cell QC metrics to the AnnData object.

add_per_gene_qcmetrics(adata, subsets[, force])

Add per-gene QC metrics to the AnnData object.

get_scale(adata[, res])

Get the scale of the image data.

is_highres(adata)

Determine whether the image data is high resolution.

is_lowres(adata)

Determines whether the image data is low resolution.

kurtosis(x[, method])

log_norm_counts(adata[, layer, inplace, ...])

Compute log-normalized counts.

scale(X[, center, unit_variance, ...])