voyagerpy.spatial.get_tissue_contour_score#

voyagerpy.spatial.get_tissue_contour_score(cntr: Any, adata: AnnData, size: str = 'hires') → float#

Get the score of a contour. This function takes a contour and returns a score for how well it fits the tissue.

Parameters:

  • cntr (Contour) – The contour to score, represented as a list of points from a cv2 findContours function.

  • adata (AnnData) – Annotated data matrix.

  • size ({"hires", "lowres"}, optional) – The resolution of the image to use, by default “hires”

Returns:

Score of the contour of how well it fits the tissue.

Return type:

float