Plotting functions

Basic plotting

draw_graph(adata[, graph_key, ax, width, ...])	Draw a networkx graph on an axes.
grouped_violinplot(ax, df, x, y[, cmap, ...])	Draw a grouped violinplot.
imshow(adata[, res, ax, tmp, title])	Show an image stored in adata.uns["spatial"].
plot_bin2d(data, x, y[, filt, subset, bins, ...])	Plot a 2D histogram of two features.
plot_fitline(x, y[, alternative, ax, color, ...])	Fit a linear model to the data and plot the fit line.
scatter(x, y[, color_by, ax, cmap, legend, ...])	Create a scatter plot of x vs y.
simple_violinplot(ax, df, y[, cmap, ...])	Draw a simple violinplot.

Special plotting

elbow_plot(adata[, ndims, reduction, ax])	Create an elbow plot for a dimensionality reduction method.
moran_plot(adata, feature[, graph_name, ...])	Create a Moran scatter plot.
plot_barcode_data(adata, y[, x, obsm, ncol, ...])	Plot barcode data from adata.obs or adata.obsm.
plot_barcode_histogram(adata, feature[, ...])	Create a histogram of the number of barcodes per feature.
plot_barcodes_bin2d(adata, *args, **kwargs)	Plot barcode features in a 2D histogram.
plot_correlogram(adata[, graph_name, ...])	Plot a correlogram of spatial autocorrelation.
plot_dim_loadings(adata, components[, ncol, ...])	Plot the loadings of a dimensionality reduction method.
plot_expression(adata, gene[, y, obsm, ax])	Plot expression of genes in adata.
plot_features_bin2d(adata, *args, **kwargs)	Plot gene features in a 2D histogram.
plot_features_histogram(adata, features[, ...])
plot_local_result(adata, obsm, features, ...)	Plot local results from the adata.obsm.
plot_moran_mc(adata, feature[, graph_name, ...])	Plots simulated Moran's I values for a feature or features.
plot_pca(adata[, ndim, cmap, color_by, ...])	Create a PCA plot of the fist ndim dimensions.
plot_spatial_feature(adata, features[, ...])	Plot spatial features.
spatial_reduced_dim(adata, dimred, ...)	Plot spatially reduced dimensions.

Helper functions

configure_subplots(nplots[, ncol])	Configure subplots for a given number of plots.
configure_violins(violins[, cmap, ...])	Configure the violins in a violinplot.
contour_plot(ax, x, y[, data, shape, ...])	Create a contour plot.
plot_single_barcode_data(adata, y[, x, ...])	Plot barcode data on a single axis.
subplots_single_colorbar([nplot, ncol, ...])	Create a figure with subplots and a single colorbar.