Index A | C | D | E | F | G | I | K | L | M | P | R | S | T | V A add_per_cell_qcmetrics() (in module voyagerpy.utils) add_per_gene_qcmetrics() (in module voyagerpy.utils) apply_transforms() (in module voyagerpy.spatial) C cancel_transforms() (in module voyagerpy.spatial) compute_correlogram() (in module voyagerpy.spatial) compute_higher_order_neighbors() (in module voyagerpy.spatial) compute_spatial_lag() (in module voyagerpy.spatial) configure_subplots() (in module voyagerpy.plotting.plot) configure_violins() (in module voyagerpy.plotting.plot) contour_plot() (in module voyagerpy.plotting.plot) D detect_tissue_threshold() (in module voyagerpy.spatial) draw_graph() (in module voyagerpy.plotting) E elbow_plot() (in module voyagerpy.plotting) F find_markers() (in module voyagerpy.utils) G get_approx_tissue_boundary() (in module voyagerpy.spatial) get_default_graph() (in module voyagerpy.spatial) get_geom() (in module voyagerpy.spatial) get_marker_genes() (in module voyagerpy.utils) get_p_clusters() (in module voyagerpy.utils) get_scale() (in module voyagerpy.utils) get_spot_coords() (in module voyagerpy.spatial) get_stat_clusters() (in module voyagerpy.utils) get_tissue_boundary() (in module voyagerpy.spatial) get_tissue_contour_score() (in module voyagerpy.spatial) get_top_hvgs() (in module voyagerpy.utils) get_visium_spots() (in module voyagerpy.spatial) grouped_violinplot() (in module voyagerpy.plotting) I imshow() (in module voyagerpy.plotting) is_highres() (in module voyagerpy.utils) is_lowres() (in module voyagerpy.utils) K kurtosis() (in module voyagerpy.utils) L local_moran() (in module voyagerpy.spatial) log_norm_counts() (in module voyagerpy.utils) losh() (in module voyagerpy.spatial) M mirror_img() (in module voyagerpy.spatial) model_gene_var() (in module voyagerpy.utils) module voyagerpy.plotting voyagerpy.spatial voyagerpy.utils, [1], [2] moran() (in module voyagerpy.spatial) moran_plot() (in module voyagerpy.plotting) P plot_barcode_data() (in module voyagerpy.plotting) plot_barcode_histogram() (in module voyagerpy.plotting) plot_barcodes_bin2d() (in module voyagerpy.plotting) plot_bin2d() (in module voyagerpy.plotting) plot_correlogram() (in module voyagerpy.plotting) plot_dim_loadings() (in module voyagerpy.plotting) plot_expression() (in module voyagerpy.plotting) plot_features_bin2d() (in module voyagerpy.plotting) plot_features_histogram() (in module voyagerpy.plotting) plot_fitline() (in module voyagerpy.plotting) plot_local_result() (in module voyagerpy.plotting) plot_moran_mc() (in module voyagerpy.plotting) plot_pca() (in module voyagerpy.plotting) plot_single_barcode_data() (in module voyagerpy.plotting.plot) plot_spatial_feature() (in module voyagerpy.plotting) R rollback_transforms() (in module voyagerpy.spatial) rotate_img90() (in module voyagerpy.spatial) S scale() (in module voyagerpy.utils) scatter() (in module voyagerpy.plotting) set_default_graph() (in module voyagerpy.spatial) set_geometry() (in module voyagerpy.spatial) simple_violinplot() (in module voyagerpy.plotting) spatial_reduced_dim() (in module voyagerpy.plotting) subplots_single_colorbar() (in module voyagerpy.plotting.plot) T to_points() (in module voyagerpy.spatial) to_spatial_weights() (in module voyagerpy.spatial) V voyagerpy.plotting module voyagerpy.spatial module voyagerpy.utils module, [1], [2]